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Internal skill. Use cc10x-router for all development tasks.
Proactively apply when generating any Slack text content, chat.postMessage text fields, or text objects with type "mrkdwn". Triggers on mrkdwn, Slack formatting, Slack markdown, Slack bold, Slack italic, Slack link syntax, Slack mentions, Slack date...
Semantic code understanding with IDE-like symbol operations. Use when: (1) Large codebase analysis (>50 files), (2) Symbol-level operations (find, rename, refactor), (3) Cross-file reference tracking, (4) Project memory and session persistence, (5) M...
Create circular genome visualizations with Circos and pyCircos. Display multi-track data including ideograms, genes, variants, CNVs, and interaction arcs. Use when creating circular genome visualizations.
Detect chromatin loops and point interactions from Hi-C data using cooltools, chromosight, and HiCCUPS-like methods. Identify CTCF-mediated loops and enhancer-promoter contacts. Use when detecting chromatin loops from Hi-C data.
Read, write, and create single-cell data objects using Seurat (R) and Scanpy (Python). Use for loading 10X Genomics data, importing/exporting h5ad and RDS files, creating Seurat objects and AnnData objects, and converting between formats. Use when lo...
Predict TCR-epitope specificity using ERGO-II and deep learning models for T-cell receptor antigen recognition. Match TCRs to their cognate epitopes or predict TCR targets. Use when analyzing TCR repertoire specificity or identifying antigen-reactive...
Create portable, standards-based bioinformatics pipelines with Common Workflow Language (CWL). Use when building workflows that need maximum portability across execution platforms, sharing pipelines with collaborators using different systems, or cont...
This skill provides comprehensive system administration and monitoring tools through x-cmd CLI, including process management, macOS system utilities, network configuration, disk health monitoring, and storage analysis. This skill should be used when...
Direct REST API access to UniProt. Protein searches, FASTA retrieval, ID mapping, Swiss-Prot/TrEMBL. For Python workflows with multiple databases, prefer bioservices (unified interface to 40+ services). Use this for direct HTTP/REST work or UniProt-s...
This skill provides comprehensive network administration and diagnostic tools through x-cmd CLI, including network scanning with Nmap, ARP table management, DNS configuration, routing table analysis, and enhanced ping utilities. This skill should be...
Microscopy data management platform. Access images via Python, retrieve datasets, analyze pixels, manage ROIs/annotations, batch processing, for high-content screening and microscopy workflows.
Creates ast-grep patterns for structural code search. Use when finding functions/classes by structure, refactoring code, or when grep returns too many false positives.
IDA Pro Python scripting for reverse engineering. Use when writing IDAPython scripts, analyzing binaries, working with IDA's API for disassembly, decompilation (Hex-Rays), type systems, cross-references, functions, segments, or any IDA database manip...
Write a commit message following the Conventional Commits specification with scope and body
Technical documentation specialist - create docs, API references, user guides for technical and non-technical audiences
iMessage/SMS CLI for listing chats, history, and sending messages via Messages.app.
TypeScript wizard specializing in advanced type systems, complex generics, and eliminating any types
This skill should be used when writing or improving system prompts for AI agents, providing expert guidance based on Anthropic's context engineering principles.
Write Domain-Driven Design architecture models using DomainLang (.dlang files). Covers domains, bounded contexts, context maps, teams, classifications, terminology, relationships, namespaces, and imports. Use when creating DDD models, mapping bounded...
Use when you have a spec or requirements for a multi-step task and need to create a detailed implementation plan before touching code.
Run nf-core bioinformatics pipelines (rnaseq, sarek, atacseq) on sequencing data. Use when analyzing RNA-seq, WGS/WES, or ATAC-seq data—either local FASTQs or public datasets from GEO/SRA. Triggers on nf-core, Nextflow, FASTQ analysis, variant callin...
Complete llama.cpp C/C++ API reference covering model loading, inference, text generation, embeddings, chat, tokenization, sampling, batching, KV cache, LoRA adapters, and state management. Triggers on: llama.cpp questions, LLM inference code, GGUF m...
Write technical blog posts with source code analysis OR doc-driven research. Use when user wants to explain system internals, architecture, implementation details, or technical concepts with citations.
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