Every Agent Skill,
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MS-DIAL-based metabolomics preprocessing as alternative to XCMS. Covers peak detection, alignment, annotation, and export for downstream analysis. Use when processing MS-DIAL output files for R/Python analysis or when preferring GUI-based preprocessi...
Analyze time-series RNA-seq data using limma voom with splines, maSigPro, and ImpulseDE2. Identify genes with dynamic expression patterns. Use when analyzing time-series or longitudinal expression data.
Calculate sequence statistics (N50, length distribution, GC content, summary reports) using Biopython. Use when analyzing sequence datasets, generating QC reports, or comparing assemblies.
Modify phylogenetic tree structure using Biopython Bio.Phylo. Use when rooting trees with outgroups or midpoint, pruning taxa, collapsing clades, ladderizing branches, or extracting subtrees.
End-to-end imaging mass cytometry workflow from raw acquisitions to spatial cell analysis. Orchestrates image preprocessing, segmentation, phenotyping, and spatial statistics. Use when analyzing imaging mass cytometry data end-to-end.
Visualize differential expression results using DESeq2/edgeR built-in functions. Covers plotMA, plotDispEsts, plotCounts, plotBCV, sample distance heatmaps, and p-value histograms. Use when visualizing differential expression results.
Handle paired-end FASTQ files (R1/R2) using Biopython. Use when working with Illumina paired reads, synchronizing pairs, interleaving/deinterleaving, or filtering paired data.
Applies a modified Fagan Inspection methodology to systematically resolve persistent bugs and complex issues. Use when multiple previous fix attempts have failed repeatedly, when dealing with intricate system interactions, or when a methodical root c...
Use when explaining code, technical concepts, or implementation decisions. Provides structured approach to creating clear, understandable explanations tailored to the audience.
Test-driven development (TDD) process used when writing code. Use whenever you are adding any new code, unless the user explicitly asks to skip TDD or the code is exploratory/spike.
Reference patterns for augmented coding with AI. Use when discussing AI coding patterns, anti-patterns, obstacles, context management, steering AI, or looking up Lexler's patterns collection.
Writes tests without mocks using Nullables. Use when writing tests, especially testing code with external I/O (HTTP, files, databases, clocks, random numbers), designing infrastructure wrappers or replacing mocking libraries.
Detects AI-generated writing patterns and suggests authentic alternatives. Auto-applies when reviewing content, editing documents, generating text, or when user mentions writing quality, AI detection, authenticity, or natural voice. Use when relevant...
Package skills into uploadable ZIP files for Claude. Use after skill-builder/skill-enhancer to create final upload package.
Build Claude skills from extracted documentation. Use after doc-scraper/pdf-extractor to generate uploadable skill packages. Use when relevant to the task.
Split large documentation (10K+ pages) into focused sub-skills with intelligent routing. Use for massive doc sites like Godot, AWS, or MSDN.
Integrate Open-Meteo Weather Forecast, Air Quality, and Geocoding APIs: query design, variable selection, timezone/timeformat/units, multi-location batching, and robust error handling. Use when fetching weather forecasts, air quality/pollen data, or...
Perform thorough code reviews with actionable, prioritized feedback. Use when a user asks to review code, check code quality, find bugs, review a pull request, audit code for issues, or get feedback on implementation. Covers correctness, security, pe...
Performs small structural code cleanups (tidyings). Use when preparing code changes, removing dead code, reducing nesting, or cleaning up before feature work.
Understand the components, mechanics, and constraints of context in agent systems. Use when writing, editing, or optimizing commands, skills, or sub-agents prompts.
Extracts reusable patterns from sessions. Use at session end to capture debugging insights and project-specific knowledge.
Create new Claude Code skills with proper structure. Use when user wants to add a skill, create a slash command, or automate a workflow. Fetches official docs and guides through skill creation.
Comprehensive guide for developing on EspoCRM - metadata-driven CRM with service layer architecture
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